Motif

class lightmotif.Motif

A base object storing information about a motif.

counts

The count matrix for this motif.

This may be None if the motif was loaded from a format that does not store counts but frequencies, such as the uniprobe format.

Type:

CountMatrix or None

name

An optional name for the motif.

Type:

str or None

protein

True if the motif is a protein motif.

Type:

bool

pssm

The scoring matrix for this motif.

Type:

ScoringMatrix

pwm

The weight matrix for this motif.

Type:

WeightMatrix